miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|168915996|gb|FE359480.1|FE359480 GATGAGAAAAGCCCCTCATTCCGGCGATGGAAAGCAAAAACACTGCCAAAGCAGATTGCGGATGTGATCCTTACCTTCTA
TCCTTAGTGGAAACCAATCAGGGACAAGAAAGTACAGTAAGGAAATCGAGTAAAACTGGTCTTTTACTGGCGTCCCTCAC
TGGAGGTGCCGCTATTATTTTAAGTGCTGTTTGTTTTCCTTTCGTTTCCCCTGCTTTGAGACGAGTTGTCTTGCCCTATG
TTCCAGCAAGCACACAACAAGTTGAAAATGTGATGGAAGCTCTTGCAAAAAGCCATGCAGGAGGAAGAAAGTTGATTGAT
CTTGGCAGTGGAGATGGAAGAATAGTTTTGGCCGCAGGGCAAAAGGGCTTCCAAAGTCATGGGGTTGAACTCAACACTGT
ACTTGTTCTCTATTCCAAGTTGACTGCTTGGAGAAACAGAATTACAAATGCAACCTTTAGCAGACAGGATTTATTCAAAG
TAGATTACACAAAATATAACAACATTGTCATCTTTGGTGTTGAAGAAATGATGCCAGAATTAGAGCAATTGTTTGGGAGA
TCTTTGAAATCTTCTAGCCAAGTCATTGCGTGTAGGTTTCCTCTGCCAAACTGGAAACCTTCACACGTCATCGGTGAAGG
GATCGACACAGTTTGGGTATACGAAGTGTGAAACCAAACCAAACAGTCCCACCGAATTCTAGTGTATTTATATCANACAA
ATAAAACCCTCTATGAATAGTCAAAAA




Most similar to sp|Q5I047|F173B_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5I047|F173B_XENLA Protein FAM173B OS=Xenopus laevis GN=fam173b
           PE=2 SV=1
          Length = 226

 Score =  179 bits (454), Expect = 2e-44
 Identities = 87/162 (53%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
 Frame = +3

Query: 186 AVCFPFVSPALRRVVLPYVPASTQQVENVMEALAKSHAGGRKLIDLGSGDGRIVLAAGQK 365
           AV  PFV+PALR++ LPYVPA+T QV+NV++ L +S  G   ++D+GSGDGRIV+AA ++
Sbjct: 45  AVATPFVAPALRKLCLPYVPATTTQVKNVLKML-RSRTG--IVVDIGSGDGRIVIAAAKE 101

Query: 366 GFQSHGVELNTVLVLYSKLTAWRNRITNAT-FSRQDLFKVDYTKYNNIVIFGVEEMMPEL 542
           GFQ+ G ELN  LV YS+  AWR  + + T F   DL+KV +++Y N+VIFGV +MMP+L
Sbjct: 102 GFQAVGYELNPWLVWYSRFRAWREGVHHHTRFYVSDLWKVSFSRYRNVVIFGVPQMMPQL 161

Query: 543 EQLFGRSLKSSSQVIACRFPLPNWKPSHVIGEGIDTVWVYEV 668
           E+     L+ +++VIACRFP PNW P H+ GEG+DTVW Y++
Sbjct: 162 EKKLQTELQDAARVIACRFPFPNWVPDHIFGEGVDTVWTYDL 203